Last Updated：2022/12/24
In brief, scaffolds were ordered using algorithm based automatic contiguation of assembled sequences (ABACAS) [ 30 ] against the C. parvum Iowa II reference genome; this genome comprises 18 contigs and mapping the assemblies to it generated 18 pseudomolecules that contained most of the assembled sequences, with typically 100 to 200 further much smaller scaffolds that could not be associated with the reference genome.
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In
brief,
scaffolds
were
ordered
using
algorithm
based
automatic
contiguation
of
assembled
sequences
(ABACAS)
[
30
]
against
the
C.
parvum
Iowa
II
reference
genome;
this
genome
comprises
18
contigs
and
mapping
the
assemblies
to
it
generated
18
pseudomolecules
that
contained
most
of
the
assembled
sequences,
with
typically
100
to
200
further
much
smaller
scaffolds
that
could
not
be
associated
with
the
reference
genome.
